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Contributing to Nextstrain — Nextstrain documentation
All source code for Nextstrain is freely available under the terms of an open-source license, typically AGPL-3.0 or MIT . Refer to specific projects for details. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided. This work is made possible by the open sharing of genetic data by research groups ...
Docs.nextstrain.orgCommunicating scientific insights — Nextstrain documentation
Docs » Communicating scientific insights ... Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided. This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. Special thanks to Kristian Andersen, Josh Batson, David Blazes, Jesse …
Docs.nextstrain.orgNextstrain CLI Development — Nextstrain documentation
(Note that ./bin/nextstrain is not the script that gets installed by pip as nextstrain; that script is generated by the entry_points configuration in setup.py.) Releasing¶ New releases are made frequently and tagged in git using a signed tag. The source and wheel (binary) distributions are uploaded to the nextstrain-cli project on PyPi. There is a ./devel/release script which will …
Docs.nextstrain.orgCommunicating Results Using Narratives — Nextstrain ...
Communicating Results Using Narratives. Narratives are a method of data-driven storytelling. They allow scientists (or anyone!) to author content which is displayed alongside the “normal” Auspice view of the data. This content drives the way in which data is displayed, so instead of the user changing how things are displayed, the view ...
Docs.nextstrain.orgConverting a narrative to PDF — Nextstrain documentation
Converting a narrative to PDF¶. This documentation will walk through how to turn a narrative into a static PDF. We understand that there are multiple reasons why PDFs may be a necessary method of distribution, but stress that narratives are designed to be viewed through auspice where you have the ability to interact with and interrogate the data.
Docs.nextstrain.orgnextstrain's profile | Read the Docs
Nextstrain-augur ( rneher trs jameshadfield) 4 days, 2 hours ago View Docs nextstrain-auspice ( rneher trs jameshadfield ) 2 days, 1 hour ago
Readthedocs.orgdocs: lists not rendering · Issue #891 · nextstrain/ncov ...
Sometime in the last few days, lists have stopped rendering properly on doc pages in this repo. Take the Data Prep page as an example: The preview generated 5 days ago for 7a9d628 looks fine (this doc page hasn't changed since then per h...
Github.comauspice - Nextstrain
Please email us if you think this is a bug. SARS-CoV-2 Sequencing for Public Health Emergency Response, Epidemiology and Surveillance (SPHERES) A national genomics consortium to coordinate SARS-CoV-2 sequencing across the United States.
Nextstrain.orgdocs.nextstrain.org/Technical-FAQ.md at master ...
Technical FAQs. We are a small team with a big job, and we are thrilled to be getting so much attention and support at this time. We have started to receive a lot of questions regarding technical aspects of the Coronavirus build, including questions about data sourcing, narratives translation, and software development.
Github.comauspice - nextstrain.org
2020-03-05 · narratives/inrb-ebola-example-sit-rep. narratives/interpretation-examples. narratives/intro-to-narratives
Nextstrain.orgdocs.nextstrain.org/glossary.rst at master · nextstrain ...
Umbrella documentation project for Nextstrain. Contribute to nextstrain/docs.nextstrain.org development by creating an account on GitHub.
Github.comauspice - Nextstrain
Auspice. "nextspain" Nextstrain group. The available datasets and narratives in this group are listed below.
Nextstrain.orgExtending Auspice - nextstrain.github.io
Nextstrain.org is one such custom build. Developing and building auspice with extensions. Auspice has two forms of extensions: Client extensions. Customising the appearence and functionality of the client is achieved through code injection at build time. The available customisations are accessed through a <clientConfig> JSON with the following properties: …
Nextstrain.github.iotrvrb's profile | Read the Docs
Nextstrain-ncov ( rneher trs jameshadfield) 15 hours, 49 minutes ago. View Docs; nextstrain-nextclade ( rneher trs jameshadfield) 3 days, 8 hours ago. View Docs; nextstrain ( rneher trs jameshadfield) 1 week, 1 day ago. View Docs
Readthedocs.orgjameshadfield's profile | Read the Docs
View Docs nextstrain-augur ( rneher trs ) 2 days, 20 hours ago nextstrain-auspice ( rneher trs ) 57 minutes ago
Readthedocs.orgnextstrain · GitHub Topics · GitHub
2021-11-14 · nextstrain / ncov-ingest. Star 16. Code. Issues. Pull requests. A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds. python bash genbank nextstrain ncov sars-cov-2 gisaid. Updated 22 hours ago.
Github.comhuddlej's profile | Read the Docs
Nextstrain-augur ( rneher trs jameshadfield) 19 hours, 1 minute ago View Docs nextstrain-auspice ( rneher trs jameshadfield ) 1 week, 5 days ago
Readthedocs.orgOverview · Auspice - nextstrain.github.io
It was originally designed for nextstrain.org, which aims to aims to provide a continually-updated view of publicly available pathogen genome data. Auspice can be used locally to view datasets, or deployed to server- or serverless-websites. It allows easy customisation of aesthetics and functionality, and powers the visualisations on nextstrain ...
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Sts.wvu.eduAuspice Server API - nextstrain.github.io
This API is largely based off the interface used by nextstrain. Most probably it will change dramatically over the coming weeks. The client (i.e. the auspice web page) makes requests to a server, for instance requesting a dataset file or requesting a listing of available datasets. The server is referred to as "charon". Currently the server needs to handle three requests (detailed …
Nextstrain.github.io
Domains Expiration Date Updated
| Site | Provider | Expiration Date |
|---|---|---|
| oasis.ca | webnames.ca | 182 Days |
| aspirefertility.in | godaddy.com | -1 Years, -48 Days |
| dmzshequ.com | godaddy.com | -1 Years, -313 Days |
| polaseklaw.com | register.com | -1 Years, -80 Days |
| cbelab.org | registrar.amazon.com | 4 Years, 109 Days |
| kaleidorolls.com | meshdigital.com | -1 Years, -256 Days |
| storeopinion-ca.info | namecheap.com | -1 Years, -131 Days |
| fertifa.com | godaddy.com | -1 Years, -315 Days |
| otor200sa.com | name.com | -2 Years, -8 Days |
| comeaux.com | networksolutions.com | 3 Years, 12 Days |