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Contact – cBioPortal Blog

Contact. We would love to hear from you! If you have questions about cBioPortal, check out our user discussion group. You can browse previous questions to see if your question has already been answered or ask a new question by sending us an email. We also have an FAQ. If you are interested in contributing code to cBioPortal, check out our page ...

Blog.cbioportal.org

Downloads - cBioPortal

Staging files for the studies on cbioportal.org can be download from the Datasets Page. These studies can be validated and loaded in a local cBioPortal instances using the validator and importer. Any issues with a downloaded study can be reported on cBioPortal DataHub. Example studies . TCGA Provisional studies often contain many different data types. These are …

Docs.cbioportal.org

Example Commands - cBioPortal

Example Commands - cBioPortal. Example Commands. Importing gene panel ###. Use this command to import a gene panel. Specify the gene panel file by replacing <path_to_genepanel_file> with the absolute path to the gene panel file. Another option is to add the gene panel files in ./study which is mounted inside the container on `/study/.

Docs.cbioportal.org

cBioPortal Hands-on Introduction - Health-RI

In case you want to upload your own data to cBioPortal, please send an email to . [email protected]. and we will help you out. Further online resources : There are two additional tutorials on : Tutorials webpage: • Tutorial #4: Virtual Studies • Tutorial #5: Onco Query Language (OQL) The FAQs on cBioPortal include: • General Questions • Data Questions o …

Health-ri.nl

cBioportal中文教程 - 简书

2018-03-17 · cBioPortal提供了集中不同的ways来可视化discrete genetic events（CNAa或突变），和连续的events，比如关于mRNA或蛋白丰度的data，或DNA甲基化数据。对于query中定义的单个gene，portal可以产生不同的plots，依赖于数据的可获得性。 mRNA vs copy-number选项展示了box-and-whisker plot来显示mRNA表达，数据来源与用户选择的 ...

Jianshu.com

cBioPortal Profile - githubmemory

Recently we have received many complaints from users about site-wide blocking of their own and blocking of their own activities please go to the settings off state, please visit：

Githubmemory.com

cBioPortal - Health-RI

To use cBioPortal for your study data, contact the Health-RI ServiceDesk. Only the PI of the study (or a delegate with explicit consent of the PI) can make the request to use cBioPortal for their study. If approved, then the service desk will send further information to the PI. It is then the PI’s responsibility to provide other users within the study with do’s and don’t and to ensure ...

Health-ri.nl

mRNA Expression: z-score to diploid or all samples?

2021-02-22 · Dear cbioportal team, I am planning on comparing the genes expressed when AR gene expression is high (AR: EXP>1) vs low (AR: EXP<-1). To do this, I need to select a method of comparing mRNA expression: z-score to diploid samples or all samples.

Groups.google.com

cBioPortal Installation Notes · GitHub

#app name: app.name = cbioportal # database db.user = cbio: db.password = P@ssword1: db.host = cbiodb: db.portal_db_name = cbioportal: db.driver = com.mysql.jdbc.Driver: db.connection_string = jdbc:mysql://cbiodb/ # set tomcat_resource_name when using dbconnector=jndi instead of the default # dbconnector=dbcp. Note that dbconnector needs to …

Gist.github.com

cBioPortal Webinar 5: API & R Client - YouTube

An introduction to using the cBioPortal REST API & R client (cBioPortalData)Recording of a webinar given on May 28, 2020.

Youtube.com

cBioPortal - GitHub

A centralized location for storing curated data ready for inclusion in cBioPortal. Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos. Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects.

Github.com

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