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We found Websites Listing below when search with data.jgi.doe.gov on Search Engine

JGI Data Portal - Energy

Our data. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The JGI takes great pride in producing high-quality genomic and metagenomic data outputs for our users and the community. We ensure consistent quality by taking the following measures: Offering …

Data.jgi.doe.gov

JGI Data Portal - data.jgi.doe.gov

JGI’s Data Portal sends you an email when your files are available for transfer. The files remain available for transfer for 14 days. How do I use Globus to download data from JGI’s Data Portal? From the results page, when you have selected the files you want to download, and if you have an active Globus account, and have a Globus endpoint that can accept transfers, Click the …

Data.jgi.doe.gov

Contact Us - DOE Joint Genome Institute

Mailing Address and Phone DOE Joint Genome Institute Lawrence Berkeley National Laboratory Mail Stop: 91R183 1 Cyclotron Road, Berkeley, CA 94720 General Information: (510) 495-8400 To search for phone numbers of JGI staff by name, see our directory. Public and Media Inquiries Contact David Gilbert, Senior Manager, Communications & Outreach: [email protected], 510 …

Jgi.doe.gov

Policies - DOE Joint Genome Institute

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by those generating data.

Jgi.doe.gov

Transcriptomics of water use ... - genome.jgi.doe.gov

JGI Home; Genome Portal; Login ({{getPortalsInCart()}} items) Transcriptomics of water use efficiency traits in sorghum and setaria. Info; Download; HELP! Proposal Name: Transcriptomics of water use efficiency traits in sorghum and setaria (Proposal ID: 504447) Proposal PI: Andrew Leakey . Program Year: 2019. Release Date: 2019-07-23 Award DOI: …

Genome.jgi.doe.gov

IMG Webinar: Data Export and Download Q&A - MGM Workshops

2020-04-27 · A: It depends on whether the data is public or private, and for public data it depends on whether it’s a JGI- generated dataset (“Sequencing Center” field contains “DOE Joint Genome Institute (JGI)”) or not. Non-JGI generated public data can be used freely. JGI-generated published data can be used freely with an appropriate citation. Use of the JGI-generated …

Mgm.jgi.doe.gov

Info - PhytozomeV10 - genome.jgi.doe.gov

Data Submission: NCBI Tax ID: 33090: Contacts: JGI: [email protected] Funding: The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Groups : This portal belongs to the following groups ## …

Genome.jgi.doe.gov

Info - Trichoderma pleuroticola TUCIM 1540 v1.0

JGI Mycoparasitic Fungi EcoGroup portal Funding The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Mycocosm.jgi.doe.gov

JGI IMG Integrated Microbial Genomes & Microbiomes

JGI keeps count of registrants and users of IMG to document the utility of these data and tools to the scientific community, then reports these numbers to JGI and Berkeley Lab stakeholders. JGI also apprises users of new portal functionality and improvements, related workshops, and other relevant resource opportunities by sending emails about 4-6 times a year.

Img.jgi.doe.gov

Select a Data Type to Begin a Query - Energy

QueryBuilder. Advanced users can use a flexible query interface to construct their own data mining queries. The QueryBuilder lets you view the data model, apply constraints and select output. You can also export queries to share them with …

Phytozome.jgi.doe.gov

Downloading IMG sequence and annotation data

For JGI-generated data you need to follow the JGI Data Usage Policy and you may need to request the PI’s permission to use the data. After agreeing to follow the JGI Data Usage Policy, a page similar to the screenshot below will appear. Note that for the JGI-generated datasets a lot more different directories with different data types are available. IMG sequence and …

Img.jgi.doe.gov

PhytoMine: Home - phytozome-next.jgi.doe.gov

The PhytoMine data warehouse is updated less frequently than the Phytozome web portal. At any given time, the most recently released genomes in Phytozome may not be incorporated into PhytoMine. Please see the Data Sources tab for information on which genomes are included in this release of PhytoMine. Search . Search PhytoMine. Enter names, identifiers or keywords …

Phytozome-next.jgi.doe.gov

Transferring Data from JGI - KBase Documentation

Transferring Data from JGI to KBase. Starting at the JGI Genome Portal, search for the genome or project of interest and click on the download link. Click on the green "Agree" button on the next page to accept the data usage policy. Near the top of the download page is a link to JGI’s Globus v.2 service. This version works by 1) transferring ...

Docs.kbase.us

JGI GOLD | Project - gold.jgi.doe.gov

2022-01-19 · DOE Joint Genome Institute (JGI) (USA) Collaborating Institute Funding Agency U.S ... JGI Data Utilization Status Restricted . JGI Award DOI 10.46936/10.25585/60000499: JGI Portal Download Raw Sequence Data: Genome Publications Other Publications Ignored Publications Unassigned Publications SRA Experiment PROJECT COMPOSITION Study Soil …

Gold.jgi.doe.gov

Overview - mycocosm.jgi.doe.gov

The primary elements of the JGI Genome Portal are listed below: 1. ... The organism portal provides access to sequence data as well as to the set of tools available for use with this organism, such as search, BLAST alignment, functional annotation (GO, KEGG, KOG), and the Genome Browser. In Portal 6.0, we have also introduced organism "Group" portals, which …

Mycocosm.jgi.doe.gov

Phytozome v13 - Energy

Tools for exploring the Phytozome collection of green plant genomes. Phytozome v13.

Phytozome-next.jgi.doe.gov

DOE Joint Genome Institute - Energy

Department of Energy Washington, D.C. 20585 September 20, 2012 In October 2011, the U. S. Department of Energy (DOE) Joint Genome Institute (JGI) issued a draft “10-Year Strategic Vision: Forging the Future of the DOE JGI.” This document provided a high-level overview of DOE JGI and its plans

Genomicscience.energy.gov

JGI Data Sources - JGI Process Improvement - Berkeley Lab ...

Berkeley Lab Commons Berkeley Lab Commons. Spaces; Quick Search. Help

Commons.lbl.gov

PhytoMine: Data Categories - Energy

An InterMine interface to data from Phytozome. The PhytoMine data warehouse is updated less frequently than the Phytozome web portal. At any given time, the most recently released genomes in Phytozome may not be incorporated into PhytoMine. Please see the Data Sources tab for information on which genomes are included in this release of PhytoMine.

Phytozome-next.jgi.doe.gov

Track and Model Editing - Mycocosm

Note: Track editing features are only enabled within a given genome portal when you are logged in as a registered JGI user and have been granted annotation privileges for that genome. To obtain annotation access, please send an email request to the JGI Annotation Group , including your JGI username (usually an e-mail address).

Mycocosm.jgi.doe.gov

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