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- role : Japan Network Information Center
- address : Uchikanda OS Bldg 4F, 2-12-6 Uchi-Kanda,Chiyoda-ku, Tokyo 101-0047, Japan
- country : JP
- phone : +81-3-5297-2311
- fax : +81-3-5297-2312
- email : [email protected]
- admin-c : JI13-AP
- tech-c : JE53-AP
- handle : JNIC1-AP
- mnt-by : MAINT-JPNIC
- last-modified : 2022-01-05T03:04:02Z
- source : APNIC
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- role : Japan Network Information Center
- address : Uchikanda OS Bldg 4F, 2-12-6 Uchi-Kanda,Chiyoda-ku, Tokyo 101-0047, Japan
- country : JP
- phone : +81-3-5297-2311
- fax : +81-3-5297-2312
- email : [email protected]
- admin-c : JI13-AP
- tech-c : JE53-AP
- handle : JNIC1-AP
- mnt-by : MAINT-JPNIC
- last-modified : 2022-01-05T03:04:02Z
- source : APNIC
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- inetnum : 133.0.0.0 - 133.255.255.255
- name : JPNIC-NET-JP-ERX
- country : JP
- abuse-c : AJ382-AP
- remarks : 133/8 block is an ERX range which transfered from,ARIN to APNIC on 2009-10-30,The original allocation date was 1997-03-01,Please search whois.nic.ad.jp for more information,about this range,% whois -h whois.nic.ad.jp ***.***.***.***/e
- status : ALLOCATED PORTABLE
- mnt-by : APNIC-HM
- mnt-lower : MAINT-JPNIC
- mnt-irt : IRT-JPNIC-JP
- last-modified : 2022-11-01T04:33:10Z
- source : APNIC
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- organization : Japan Network Information Center
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- IP address: 133.1.49.90
- Location: Japan
- Latitude: 35.69
- Longitude: 139.69
- Timezone: Asia/Tokyo
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Websites Listing
We found Websites Listing below when search with sysimm.ifrec.osaka-u.ac.jp on Search Engine
aaRNA - Modeling Protein-RNA Interactions - Osaka U
Send email notification when finished. Submit Reset. Modeling Protein-RNA Interactions. aaRNA is an RNA binding site predictor using various features that out-performs sequence- or structure-only predictors. Sequence-based predictors are usually shortsighted, due their fragmented view of a binding site. By contrast, structure-based predictors can reach higher specificity but usually …
Sysimm.ifrec.osaka-u.ac.jpsysimm.org - Systems Immunology Laboratory
Dianita Susilo (Department of Genome Informatics, Osaka University) Telephone: 06-6879-8368 E-mail: [email protected] . Update on emerging SARS-CoV-2 variants. We previously investigated the …
Sysimm.orgOSCAR - Osaka U
OSCAR-o Side Chain Modeling Program. OSCAR-star fast side chain modeling program. OSCAR-Whole Loop Scoring: 32-Bit Binary for Linux 2.6.18-164.11.1.el5. OSCAR-Whole Loop Scoring: 64-Bit Binary for Linux 2.6.18 …
Sysimm.ifrec.osaka-u.ac.jpPipeline 7 - sysimm.ifrec.osaka-u.ac.jp
Email Address If your query contains multiple domains, or if you are unsure of the domain boundaries, we recommend performing a 2D prediction at the first step. Start 2D Prediction Start 3D Prediction. feedback
Sysimm.ifrec.osaka-u.ac.jpSurfit - Osaka U
PDB File PDB ID. Select file. Change. Ligand is a RNA Molecule. Notify via email after calculation. Optional Input. Use Restraints for Docking …
Sysimm.ifrec.osaka-u.ac.jpSeSAW - sysimm.ifrec.osaka-u.ac.jp
You can contact Daron Standley (email: standley[at]biken.osaka-u.ac.jp) for further queries. Functional Mapping by Se quence-derived S tructure A lignment W eights. SeSAW is a service for locating sequentially and structrally similar motifs to a query protein by searching the Protein Data Bank. Learn more. The Upload File function is currently undergoing maintenance. Input PDB …
Sysimm.ifrec.osaka-u.ac.jpABOUT SEQUENCE TO FUNCTION ANNOTATION SERVER SFAS - …
The results are returned by email so you must provide a valid email address to use SFAS. Output A notification email will be sent when the SFAS job has completed, as shown in figure 3. Figure 2. Choosing the alignment method. Figure 3. Email notification. ABOUT SEQUENCE TO FUNCTION ANNOTATION SERVER VERSION 1 PAGE 2 OF 4. The link contained in the …
Sysimm.ifrec.osaka-u.ac.jpVERSION 2 SeSAW - Osaka U
To finish, email notification is the default behavior. Results will be stored on our server for two weeks. The main results page is illustrated in figure3 3-5. In figures 3A-5A, the template names appear at the leftmost column, and are linked to their summary page at the Protein Data Bank Japan [6]. The SeSAW score and sequence identity are listed, along with the CATH or SCOP …
Sysimm.ifrec.osaka-u.ac.jpSystems Immunology - sysimm.ifrec.osaka-u.ac.jp
Systems Immunology Lab homepage. To continue, enter the keyword provided to you and hit the submit button
Sysimm.ifrec.osaka-u.ac.jpRepertoire Builder: high-throughput structural modeling of ...
2019-06-21 · * Corresponding authors a Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan E-mail: [email protected] b Research Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan
Pubs.rsc.orgProtein side chain modeling with orientation ... - Wiley
2011-03-04 · [email protected]; Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan . Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, JapanSearch for more papers by this author. Yaoqi Zhou, Indiana University School of Informatics, Indiana …
Onlinelibrary.wiley.comImmuno-Navigator, a batch-corrected coexpression ... - PNAS
2016-04-13 · Here, we present Immuno-Navigator (sysimm.ifrec.osaka-u.ac.jp/ immuno-navigator/), to our knowledge the first gene expression and coexpression database which addresses the two issues of cell type-specific correlation of expression and the influence of batch effects for cells of the hematopoietic lineage. Immuno-Navigator
Pnas.orgMembers - Osaka U
Diez[at]ifrec.osaka-u.ac.jp Marting Loza Engineering Ph.D. student mloza[at]ifrec.osaka-u.ac.jp : Alumni. Yutaro Kumagai Unit leader. Shunsuke …
Qimm.ifrec.osaka-u.ac.jpFast and accurate prediction of protein side-chain ...
2011-08-27 · Europe PMC is an archive of life sciences journal literature. Summary: We developed a fast and accurate side-chain modeling program [Optimized Side Chain Atomic eneRgy (OSCAR)-star] based on orientation-dependent energy functions and a rigid rotamer model. The average computing time was 18 s per protein for 218 test proteins with higher …
Europepmc.orgProtein loop selection using orientation-dependent force ...
2011-05-13 · Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan. [email protected] ORCIDs linked to this article Zhang C, 0000-0002-1827-8137 , University of Nebraska-Lincoln
Europepmc.orgProtein Loop Modeling with Optimized Backbone Potential ...
We represented protein backbone potential as a Fourier series. The parameters of the backbone dihedral potential were initialized to random values and optimized by Monte Carlo simulations so that generated native-like loop decoys had a lower energy than non-native decoys. The low energy regions of the optimized backbone potential were consistent with observed …
Pubs.acs.orgWhich is more reliable, I-Tasser or Rosetta? - ResearchGate
2020-11-09 · The American University in Cairo. I-Tasser is more reliable in my opinion for predicting protein structure. Cite. 4th Apr, 2017. Maksim Kouza. Nationwide Children's Hospital. Different tools ...
Researchgate.netFunctional annotation of intrinsically disordered domains ...
2012-01-01 · Share this article Share with email Share with twitter Share with linkedin Share with facebook. Abstract . Function prediction of intrinsically disordered domains (IDDs) using sequence similarity methods is limited by their high mutability and prevalence of low complexity regions. We describe a novel method for identifying similar IDDs by a similarity metric based on amino acid …
Europepmc.org(PDF) Engineered ACE2 counteracts vaccine-evading SARS-CoV ...
2021-12-23 · Abstract and Figures. The novel SARS-CoV-2 variant, Omicron (B.1.1.529) contains an unusually high number of mutations (>30) in the …
Researchgate.netA single polymorphic amino acid on Toxoplasma gondii ...
2009-11-23 · Luciferase reporters containing the Stat3-dependent promoter constructs (gifts from T. Hirano, Osaka University, Suita, Osaka, Japan) have been previously described (Nakajima et al., 1996; Ichiba et al., 1998). Fragments of type I and type II ROP16 lacking the N-terminal signal peptide (amplified using the primer 5′-GAATTCACCATGCGATACATGTCGTTTGAG-3′ and …
Ncbi.nlm.nih.gov
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